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2024

1. Unraveling Microbial Community Structure–function Relationships in the Horizontal and Vertical Spatial Dimensions in Extreme Environments

   Jing X., Classen A. T., Li D., Lin L., Lu M., Sanders N. J., Wang Y., Feng W.,

   Ecography
2. Evaluating Plant Lineage Losses and Gains in Temperate Forest Understories: A Phylogenetic Perspective on Climate Change and Nitrogen Deposition

   Padullés Cubino J., Lenoir J., Li D., ^§Montaño-Centellas F. A., Retana J., Baeten L., Bernhardt-Römermann M., Chudomelová M., Closset D., Decocq G., De Frenne P., Diekmann M., Dirnböck T., Durak T., Hédl R., Heinken T., Jaroszewicz B., Kopecký M., Macek M., Máliš F., Naaf T., Orczewska A., Petřík P., Pielech R., Reczyńska K., Schmidt W., Standovár T., Świerkosz K., Teleki B., Verheyen K., Vild O., Waller D., Wulf M., Chytrý M.,

   New Phytologist

2023

3. Rtrees: An R Package to Assemble Phylogenetic Trees From Megatrees

   Li D.,

   Ecography
4. Global Patterns and Drivers of Raptor Phylogenetic and Functional Diversity

   ^§Montaño-Centellas F., Baiser B., McGrew A., Trotta L., Li D.,

   Global Ecology and Biogeography
5. Playing With Open Biodiversity Datasets: Case Studies Using Data From NEON, EDI, and GoMRI

   Chen X., Li D.,

   Teaching Issues and Experiments in Ecology
6. Phenological Research Based on Natural History Collections: Practical Guidelines and a Lepidopteran Case Study

   Belitz M. W., Larsen E. A., Shirey V., Li D., Guralnick R. P.,

   Functional Ecology
7. Co-Occurring Bunchgrasses Are Associated With Different Plant Species in Dry Pine Savannas

   Baruzzi C., Li D., Fill J. M., Crandall R. M.,

   Restoration Ecology
8. Phylogenetic Diversity of Eastern Asia–eastern North America Disjunct Plants Is Mainly Associated With Divergence Time

   Lin H., Sun M., Hao Y., Li D., Gitzendanner M. A., Fu C., Soltis D. E., Soltis P. S., Zhao Y.,

   Plant Diversity
9. Effects of Non-Native Species on Phylogenetic Dispersion of Freshwater Fish Communities in North America

   Qian H., Chu C., Li D., Cao Y., Sandel B., Anas M. U. M., Mandrak N. E.,

   Diversity and Distributions
10. Climate Change Filtered Out Resource-Acquisitive Plants in a Temperate Grassland in Inner Mongolia, China

    Jing H., Xiong X., Jiang F., Pu X., Ma W., Li D., Liu Z., Wang Z.,

    Science China Life Sciences

2022

11. Standardized NEON Organismal Data for Biodiversity Research

    Li D., Record S., Sokol E. R., Bitters M. E., Chen M. Y., Chung Y. A., Helmus M. R., Jaimes R., Jansen L., Jarzyna M. A., Just M. G., LaMontagne J. M., Melbourne B. A., Moss W., Norman K. E. A., Parker S. M., Robinson N., Seyednasrollah B., Smith C., Spaulding S., Surasinghe T. D., Thomsen S. K., Zarnetske P. L.,

    Ecosphere
12. Urbanization Delays Plant Leaf Senescence and Extends Growing Season Length in Cold but Not in Warm Areas of the Northern Hemisphere

    Li D., Stucky B. J., Baiser B., Guralnick R.,

    Global Ecology and Biogeography
13. Aridity Drives Phylogenetic Diversity and Species Richness Patterns of Nitrogen-Fixing Plants in North America

    Doby J. R., Li D., Folk R. A., Siniscalchi C. M., Guralnick R. P.,

    Global Ecology and Biogeography
14. Fire, Insect and Disease-Caused Tree Mortalities Increased in Forests of Greater Structural Diversity During Drought

    Zhai L., Coyle D. R., Li D., Jonko A.,

    Journal of Ecology
15. Functional Traits Mediate Individualistic Species-Environment Distributions at Broad Spatial Scales While Fine-Scale Species Associations Remain Unpredictable

    Beck J. J., Li D., Johnson S. E., Rogers D., Cameron K. M., Sytsma K. J., Givnish T. J., Waller D. M.,

    American Journal of Botany
16. Functional Trait Data for Vascular Plant Species From Northeastern North America

    Waller D. M., Paulson A. K., Richards J. H., Alverson W. S., Amatangelo K. L., Bai C., Johnson S. E., Li D., Sonnier G., Toczydlowski R. H.,

    Ecology
17. Community Stability Is Related to Animal Diversity Change

    Jarzyna M. A., Norman K. E. A., LaMontagne J. M., Helmus M. R., Li D., Parker S. M., Perez Rocha M., Record S., Sokol E. R., Zarnetske P. L., Surasinghe T. D.,

    Ecosphere
18. Exploring Discrepancies Between in Situ Phenology and Remotely Derived Phenometrics at NEON Sites

    Donnelly A., Yu R., Jones K., Belitz M., Li B., Duffy K., Zhang X., Wang J., Seyednasrollah B., Gerst K. L., Li D., Kaddoura Y., Zhu K., Morisette J., Ramey C., Smith K.,

    Ecosphere

2021

19. Climate, Urbanization, and Species Traits Interactively Drive Flowering Duration

    Li D., Barve N., Brenskelle L., Earl K., Barve V., Belitz M. W., Doby J., Hantak M. M., Oswald J. A., Stucky B. J., Walters M., Guralnick R. P.,

    Global Change Biology
20. Climate Drivers of Adult Insect Activity Are Conditioned by Life History Traits

    Belitz M. W., Barve V., Doby J. R., Hantak M. M., Larsen E. A., Li D., Oswald J. A., Sewnath N., Walters M., Barve N., Earl K., Gardner N., Guralnick R. P., Stucky B. J.,

    Ecology Letters
21. Harnessing the NEON Data Revolution to Advance Open Environmental Science With a Diverse and Data-Capable Community

    Nagy R. C., Balch J. K., Bissell E. K., Cattau M. E., Glenn N. F., Halpern B. S., Ilangakoon N., Johnson B., Joseph M. B., Marconi S., O’Riordan C., Sanovia J., Swetnam T. L., Travis W. R., Wasser L. A., Woolner E., Zarnetske P., Abdulrahim M., Adler J., Barnes G., Bartowitz K. J., Blake R. E., Bombaci S. P., Brun J., Buchanan J. D., Chadwick K. D., Chapman M. S., Chong S. S., Chung Y. A., Corman J. R., Couret J., Crispo E., Doak T. G., Donnelly A., Duffy K. A., Dunning K. H., Duran S. M., Edmonds J. W., Fairbanks D. E., Felton A. J., Florian C. R., Gann D., Gebhardt M., Gill N. S., Gram W. K., Guo J. S., Harvey B. J., Hayes K. R., Helmus M. R., Hensley R. T., Hondula K. L., Huang T., Hundertmark W. J., Iglesias V., Jacinthe P., Jansen L. S., Jarzyna M. A., Johnson T. M., Jones K. D., Jones M. A., Just M. G., Kaddoura Y. O., Kagawa-Vivani A. K., Kaushik A., Keller A. B., King K. B. S., Kitzes J., Koontz M. J., Kouba P. V., Kwan W., LaMontagne J. M., LaRue E. A., Li D., Li B., Lin Y., Liptzin D., Long W. A., Mahood A. L., Malloy S. S., Malone S. L., McGlinchy J. M., Meier C. L., Melbourne B. A., Mietkiewicz N., Morisette J. T., Moustapha M., Muscarella C., Musinsky J., Muthukrishnan R., Naithani K., Neely M., Norman K., Parker S. M., Perez Rocha M., Petri L., Ramey C. A., Record S., Rossi M. W., SanClements M., Scholl V. M., Schweiger A. K., Seyednasrollah B., Sihi D., Smith K. R., Sokol E. R., Spaulding S. A., Spiers A. I., St. Denis L. A., Staccone A. P., Stack Whitney K., Stanitski D. M., Stricker E., Surasinghe T. D., Thomsen S. K., Vasek P. M., Xiaolu L., Yang D., Yu R., Yule K. M., Zhu K.,

    Ecosphere
22. The Role of Functional Strategies in Global Plant Distribution

    Liao H., Li D., Zhou T., Huang B., Zhang H., Chen B., Peng S.,

    Ecography
23. Mammalian Body Size Is Determined by Interactions Between Climate, Urbanization, and Ecological Traits

    Hantak M. M., McLean B. S., Li D., Guralnick R. P.,

    Communications Biology
24. Taxonomic and Phylogenetic Β-Diversity of Freshwater Fish Assemblages in Relationship to Geographical and Climatic Determinants in North America

    Qian H., Cao Y., Chu C., Li D., Sandel B., Wang X., Jin Y.,

    Global Ecology and Biogeography
25. Analyzing a Phenological Anomaly in Yucca of the Southwestern United States

    Brenskelle L., Barve V., Majure L. C., Guralnick R. P., Li D.,

    Scientific Reports

2020

26. Phyr: An R Package for Phylogenetic Species-Distribution Modelling in Ecological Communities

    Li D., Dinnage R., Nell L. A., Helmus M. R., Ives A. R.,

    Methods in Ecology and Evolution
27. Changes in Taxonomic and Phylogenetic Diversity in the Anthropocene

    Li D., Olden J. D., Lockwood J. L., Record S., McKinney M. L., Baiser B.,

    Proceedings of the Royal Society B: Biological Sciences
28. Climate and Plant Community Diversity in Space and Time

    Harrison S., Spasojevic M. J., Li D.,

    Proceedings of the National Academy of Sciences
29. Geographic Patterns and Environmental Correlates of Phylogenetic Relatedness and Diversity for Freshwater Fish Assemblages in North America

    Qian H., Cao Y., Li D., Chu C., Sandel B., Wang X.,

    Ecography
30. Methods for Broad-Scale Plant Phenology Assessments Using Citizen Scientists’ Photographs

    Barve V. V., Brenskelle L., Li D., Stucky B. J., Barve N. V., Hantak M. M., McLean B. S., Paluh D. J., Oswald J. A., Belitz M. W., Folk R. A., Guralnick R. P.,

    Applications in Plant Sciences
31. Body Size Trends in Response to Climate and Urbanization in the Widespread North American Deer Mouse, Peromyscus Maniculatus

    Guralnick R., Hantak M. M., Li D., McLean B. S.,

    Scientific Reports

2019

32. Ecogeographical Rules and the Macroecology of Food Webs

    Baiser B., Gravel D., Cirtwill A. R., Dunne J. A., Fahimipour A. K., Gilarranz L. J., Grochow J. A., Li D., Martinez N. D., McGrew A., Poisot T., Romanuk T. N., Stouffer D. B., Trotta L. B., Valdovinos F. S., Williams R. J., Wood S. A., Yeakel J. D.,

    Global Ecology and Biogeography
33. For Common Community Phylogenetic Analyses, Go Ahead and Use Synthesis Phylogenies

    Li D., Trotta L., Marx H. E., Allen J. M., Sun M., Soltis D. E., Soltis P. S., Guralnick R. P., Baiser B.,

    Ecology
34. Functional Diversity Is a Passenger but Not Driver of Drought-Related Plant Diversity Losses in Annual Grasslands

    Miller J. E. D., Li D., LaForgia M., Harrison S.,

    Journal of Ecology
35. Bayesian LDA for Mixed-Membership Clustering Analysis: The Rlda Package

    Albuquerque P. H. M., Valle D. R., Li D.,

    Knowledge-Based Systems
36. Climate Drives Loss of Phylogenetic Diversity in a Grassland Community

    Li D., Miller J. E. D., Harrison S.,

    Proceedings of the National Academy of Sciences
37. The Effect of Urbanization on Plant Phenology Depends on Regional Temperature

    Li D., Stucky B. J., Deck J., Baiser B., Guralnick R. P.,

    Nature Ecology & Evolution

2018

38. Homogenization of Species Composition and Species Association Networks Are Decoupled

    Li D., Poisot T., Waller D. M., Baiser B.,

    Global Ecology and Biogeography
39. Species Richness and Phylogenetic Diversity of Native and Non-Native Species Respond Differently to Area and Environmental Factors

    Li D., Monahan W. B., Baiser B.,

    Diversity and Distributions
40. Taxonomic and Phylogenetic Homogenization Across US National Parks: The Role of Non-Native Species

    Li D., Lockwood J. L., Baiser B.,

    From Biocultural Homogenization to Biocultural Conservation
41. Global Environmental Change Effects on Plant Community Composition Trajectories Depend Upon Management Legacies

    Perring M. P., Bernhardt‐Römermann M., Baeten L., Midolo G., Blondeel H., Depauw L., Landuyt D., Maes S. L., Lombaerde E. D., Carón M. M., Vellend M., Brunet J., Chudomelová M., Decocq G., Diekmann M., Dirnböck T., Dörfler I., Durak T., Frenne P. D., Gilliam F. S., Hédl R., Heinken T., Hommel P., Jaroszewicz B., Kirby K. J., Kopecký M., Lenoir J., Li D., Máliš F., Mitchell F. J. G., Naaf T., Newman M., Petřík P., Reczyńska K., Schmidt W., Standovár T., Świerkosz K., Calster H. V., Vild O., Wagner E. R., Wulf M., Verheyen K.,

    Global Change Biology
42. Community Assembly of the Ferns of Florida

    Sessa E. B., Chambers S. M., Li D., Trotta L., Endara L., Burleigh J. G., Baiser B.,

    American Journal of Botany
43. Community Phylogeny of the Globally Critically Imperiled Pine Rockland Ecosystem

    Trotta L. B., Baiser B., Possley J., Li D., Lange J., Martin S., Sessa E. B.,

    American Journal of Botany
44. Soil Microbes Regulate Forest Succession in a Subtropical Ecosystem in China: Evidence From a Mesocosm Experiment

    Liao H., Huang F., Li D., Kang L., Chen B., Zhou T., Peng S.,

    Plant and Soil
45. Rr2: An R Package to Calculate R2s for Regression Models

    Ives A. R., Li D.,

    Journal of Open Source Software
46. Understanding Context Dependency in the Response of Forest Understorey Plant Communities to Nitrogen Deposition

    Perring M. P., Diekmann M., Midolo G., Schellenberger Costa D., Bernhardt-Römermann M., Otto J. C. J., Gilliam F. S., Hedwall P., Nordin A., Dirnböck T., Simkin S. M., Máliš F., Blondeel H., Brunet J., Chudomelová M., Durak T., De Frenne P., Hédl R., Kopecký M., Landuyt D., Li D., Manning P., Petřík P., Reczyńska K., Schmidt W., Standovár T., Świerkosz K., Vild O., Waller D. M., Verheyen K.,

    Environmental Pollution
47. HillR: Taxonomic, Functional, and Phylogenetic Diversity and Similarity Through Hill Numbers

    Li D.,

    Journal of Open Source Software
48. Comparing Species–area Relationships of Native and Exotic Species

    Baiser B., Li D.,

    Biological Invasions

2017

49. Can Functional Traits Account for Phylogenetic Signal in Community Composition?

    Li D., Ives A. R., Waller D. M.,

    New Phytologist
50. Fire Exclusion and Climate Change Interact to Affect Long-Term Changes in the Functional Composition of Plant Communities

    Li D., Waller D. M.,

    Diversity and Distributions
51. The Statistical Need to Include Phylogeny in Trait-Based Analyses of Community Composition

    Li D., Ives A. R.,

    Methods in Ecology and Evolution
52. Combining Biodiversity Resurveys Across Regions to Advance Global Change Research

    Verheyen K., De Frenne P., Baeten L., Waller D. M., Hédl R., Perring M. P., Blondeel H., Brunet J., Chudomelová M., Decocq G., De Lombaerde E., Depauw L., Dirnböck T., Durak T., Eriksson O., Gilliam F. S., Heinken T., Heinrichs S., Hermy M., Jaroszewicz B., Jenkins M. A., Johnson S. E., Kirby K. J., Kopecký M., Landuyt D., Lenoir J., Li D., Macek M., Maes S. L., Máliš F., Mitchell F. J. G., Naaf T., Peterken G., Petřík P., Reczyńska K., Rogers D. A., Schei F. H., Schmidt W., Standovár T., Świerkosz K., Ujházy K., Van Calster H., Vellend M., Vild O., Woods K., Wulf M., Bernhardt-Römermann M.,

    BioScience

2016

53. Long-Term Shifts in the Patterns and Underlying Processes of Plant Associations in Wisconsin Forests

    Li D., Waller D.,

    Global Ecology and Biogeography

2015

54. Drivers of Observed Biotic Homogenization in Pine Barrens of Central Wisconsin

    Li D., Waller D.,

    Ecology

2013

55. The Effects of Leaf Litter Evenness on Decomposition Depend on Which Plant Functional Group Is Dominant

    Li D., Peng S., Chen B.,

    Plant and Soil
56. Non-Additive Effects on Decomposition From Mixing Litter of the Invasive Mikania Micrantha H.B.K. With Native Plants

    Chen B., Peng S., D’Antonio C. M., Li D., Ren W.,

    PLoS ONE

2009

57. Research Progress on Merremia Boisiana

    Wang B., Peng S., Li D., Zhou T.,

    Chinese Journal of Ecology